博士,教授,硕士生导师
第20届国际生物信息学会议主席(InCoB 2021);亚太地区最早的生物信息学组织亚太生物信息学网络
(Asia Pacific Bioinformatics Network, APBioNET)执行委员会委员暨中国联络员(Liaison) ;
Frontiers in Genetics副主编;MDPI Genes编辑
一、受教育经历 Educational Background
郑云,1998年毕业于北京航空航天大学,获得制造工程工学学士学位,2007年毕业于新加坡南洋理工大学,获得计算机科学哲学博士学位。他从2005年12月到2006年8月在新加坡国立大学担任Research Fellow,从2006年8月至2009年1月在美国圣路易斯华盛顿大学任Research Associate,从事博士后研究。他从2009年1月至2013年8月任复旦大学发育生物学研究所副教授,PI。郑云博士于2013年8月加入昆明理工大学,任生命科学与技术学院生物信息实验室PI。他分别在2011年3到4月,2013年4到5月以及2018年8到9月间应邀以访问学者学者身份访问了美国俄克拉荷马州立大学;在2011年7至8月和2013年11月至12月应邀以访问教授身份访问了新加坡南洋理工大学;在2015年1到2月间以访问教授身份访问了澳大利亚悉尼科技大学。2018年担任第29届国际基因组信息学会议主席。
In 1998, Yun Zheng got his Bachelor degree in Manufacturing Engineering from Beijing University of Aeronautics and Astronautics, and PhD in computer science from Nanyang Technological University, Singapore, in 2007. He worked as a research fellow at the National University of Singapore, Singapore, from December 2005 to August 2006, and as a research associate at Washington University in St. Louis, US, from August 2006 to January 2009. From January 2009 to August 2013, he was an associate professor and PI of Institute of Developmental Biology and Molecular Medicine of Fudan University, China. In August 2013, Dr. Zheng Yun joined Kunming University of Science and Technology, China, as a PI of Bioinformatics Laboratory. He was a Visiting Faculty of Oklahoma State University, US, from March to April in 2011, April to May in 2013 and August to September in 2018. He was a Visiting Professor of Nanyang Technological University, Singapore, from July to August in 2011 and November to December in 2013, and of University of Technology Sydney, Australia, from January to February in 2015. In 2018, he was the chair of the 29th International Conference on Genome Informatics (GIW 2018). He is an Academic Editor of PLoS ONE since July, 2014. He is on the Editor Board of Frontiers in Genetics.
二、主要研究方向 Major research
microRNA介导的基因调控的相关计算机算法,Gene Ontology,信号通路,基因组学,转录组学,机器学习和计算学习的理论基础。
Computer algorithms of microRNA-based gene regulation, miRNA editing, miRNA target, lariat RNA, intron, intron branch point, gene ontology, signaling pathway, genomics, transcriptome, data mining, machine learning and computational learning theory.
三、科研领域描述 Description of the Research
MicroRNA是一类最近发现的具有调控功能的重要非编码小RNA。我们目前的一些科研包括小RNA高通量测序数据分析,基于高通量测序的转录组分析,识别和鉴定microRNA在植物发育、抗逆和肝癌、结肠癌等疾病中的功能,癌症诊断新分子标记物的预测和验证,CHIP-seq数据分析,基因调控网络分析,SNP和疾病的分析,基因GO和信号通路分析,蛋白质互作网络分析。
Our current research area includes transcriptome analysis, single cell transcriptomics, identification of miRNAs, identification of miRNA editing sites, identification of microRNA targets, lariat RNA, prediction of intron branch point, circular RNA, prediction of new molecular markers for cancer diagnosis, CHIP-seq data analysis, gene regulatory network analysis, SNP and disease analysis, gene ontology and pathway analysis, and protein interaction network analysis.
四、承担科研项目情况 Scientific Grants
五、获奖情况 HONORS AND AWARDS
六、发表专著与图书章节 PUBLICATIONS
1. Yun Zheng. Computational Non-coding RNA Biology. Academic Press (Elsevier), ISBN 978-0128143650, Oct 1, 2018, Cambridge, MA.
2. Yun Zheng#, Junqiang Guo, Ching Man Wai, Ray Ming, Ramanjulu Sunkar. MicroRNAs, tasiRNAs, phasiRNAs and their potential functions in pineapple. in R. Ming (Eds.), Genetics and Genomics of Pineapple, pp. 167-182, DOI:10.1007/978-3-030-00614-3_12. Cham, Switzerland: Springer International Publishing AG.
七、代表性论文 Journal Papers
八、Conference Papers